Main
Qiqi Xie
Bioinformatics Scientist. Data scientist. Biologist. Master of Medicine.
I received the B.S. degree in Bachelor of Medicine from Nanchang University, City, China, in 2015 and the M.S. degree in Clinical Surgery from Lanzhou University, City, China, in 2019. I am currently undertaking doctoral training at Indiana University Bloomington, specializing in cancer stem cells, and I plan to pursue postdoctoral training in the future.
I am broadly interested in gbm, breast cancer, bone tumor, and neuropathic pain. Fluent in Bioinformatics, NGS analysis, scRNA-seq, and machine learning.
Education
Ph.D. in Oncology
Indiana University Bloomington
Bloomington, IN 47405
2026 - 2023
- Indiana University School of Medicine Bloomington
Master of Orthopedics
Lanzhou University
Gansu, CN
2019 - 2016
- Mechanism of TRPM2-GSK3B Signaling Pathway in Diabetic Osteoporosis
Diploma of Clinical Medicine
Nanchang University
Jiangxi, CN
2015 - 2010
Certificate
Outstanding Graduates
N/A
Lanzhou University
2018
National Scholarships
N/A
Lanzhou University
The First-Prize Scholarship
N/A
Lanzhou University
The Third-Prize Scholarship
N/A
Lanzhou University
2016
The Third-Prize Scholarship
N/A
Nanchang University
2014
The Second-Prize Scholarship
N/A
Nanchang University
2012
National College English Competition Encouragement Award
N/A
Nanchang University
2011
Grants
Qinghai Provincial Breast Center Key Specialty Construction
Participation
N/A
2023 - 2022
Popularization and application of early diagnosis and treatment technology for breast cancer in Qinghai Province
Participation
N/A
2022 - 2021
Study on the mechanism of single cell sequencing in bone metastasis of Breast Cancer
Participation
N/A
2021 - 2020
Pain mechanism and treatment of spinal diseases
Participation
N/A
2020 - 2019
The mechanism of exosome microRNAs in osteoporosis
Participation
N/A
Mechanism of TRPM2-GSK3B ta Signaling Pathway in Diabetic Osteoporosis
Participation
N/A
2019 - 2018
Endogenous cannabinoids regulate astrocyte-mediated pain: the MAPK-Glu-Gln shuttle pathway
Participation
N/A
2018 - 2017
Publications
Correlation between mismatch repair and survival of patients with gastric cancer after 5-FU-based adjuvant chemotherapy
J Gastroenterol
N/A
2023
- Zhao F, Li E, Shen G, Dong Q, Ren D, Wang M, Zhao Y, Liu Z, Ma J, Xie Q, Liu Z, Li Z, Gao L, Zhao J
- SCI, IF=6.772, JCR Q1
SKI knockdown suppresses apoptosis and extracellular matrix degradation of nucleus pulposus cells via inhibition of the Wnt/β-catenin pathway and ameliorates disc degeneration
Apoptosis
N/A
2022
- Wu ZL, Chen YJ, Zhang GZ, Xie QQ, Wang KP, Yang X, Liu TC, Wang ZQ, Zhao GH, Zhang HH
- SCI, IF=5.561, JCR Q2
Role of the Wnt pathway in the formation, development, and degeneration of intervertebral discs
Pathol Res Pract
N/A
- Zuo-Long Wu, Qiqi Xie*, Tai-Cong Liu, Xing Yang, Guang-Zhi Zhang, Hai-Hong Zhang
- SCI, IF=3.250, JCR Q4
- Co-first_authors
A four-methylated LncRNA signature predicts survival of osteosarcoma patients based on machine learning
Genomics
N/A
- Yajun Deng, Wenhua Yuan, Enhui Ren, Guangzhi Zhang, Zuolong Wu, Qiqi Xie*
- SCI, IF=5.732, JCR Q3
- Corresponding_author
Protein Kinase A Is Involved in Neuropathic Pain by Activating the p38MAPK Pathway to Mediate Spinal Cord Cell Apoptosis
Mediators of Inflammation
N/A
- Yajun Deng, Liang Yang, Qiqi Xie, Fengbiao Yang, Guoqiang Li, Guangzhi Zhang, Shaoping Li, Zuolong Wu, Jing Wang, Xuewen Kang*
- SCI, IF=4.711, JCR Q3
- Co-first_authors
MCM2 and NUSAP1 Are Potential Biomarkers for the Diagnosis and Prognosis of Pancreatic Cancer
BioMed Research International
N/A
- Yajun Deng, Hanyun Ma, Jinyong Hao*, Qiqi Xie*, Ruochen Zhao*
- SCI, IF=3.411, JCR Q3
- Corresponding_author
Decreased expression of NUSAP1 predicts poor overall survival in cervical cancer
Journal of Cancer
N/A
- Qiqi Xie, Wen Ou-yang, Mingwei Zhang, Huimei Wang, Qiuyuan Yue*
- SCI, IF=4.200, JCR Q3
- First_authors
GRB10 and E2F3 as Diagnostic Markers of Osteoarthritis and Their Correlation with Immune Infiltration
Diagnostics
N/A
- Yajun Deng, Enhui Ren, Wenhua Yuan , Guangzhi Zhang, Zuolong Wu, Qiqi Xie*
- SCI, IF=3.701, JCR Q3
- Corresponding_author
Identification of diagnostic markers for major depressive disorder by cross-validation of data from whole blood samples
PeerJ
N/A
2019
- Huimei Wang, Mingwei Zhang, Qiqi Xie, Jin Yu, Yan Qi, Qiuyuan Yue*
- SCI, IF=2.984, JCR Q3
Anterior versus posterior decompression for the treatment of thoracolumbar fractures with spinal cord injury:a Meta-analysis
China journal of orthopaedics and traumatology
N/A
- Enhui Ren, Yajun Deng, Qiqi Xie, Liang Yang, Guangzhi Zhang, Shaoping Li, Zuolong Wu, Jing Wang, Xuewen Kang*
- SCI
Identification of potential diagnostic and therapeutic target genes for lung squamous cell carcinoma
Oncology Letters
N/A
- Nana Zhang, Hong Wang, Qiqi Xie, Hua Cao, Fanqi Wu, Dan Bei Di Wu, Yixin Wan*
- SCI, IF=2.860, JCR Q4
- Co-first_authors
Integrative analyses of genes associated with idiopathic pulmonary fibrosis
Journal of Cellular Biochemistry
N/A
- Huimei Wang, Qiqi Xie, Wen Ou_Yang, Mingwei Zhang*
- SCI, IF=4.423, JCR Q3
Slow skeletal muscle troponin T, titin and myosin light chain 3 are candidate prognostic biomarkers for Ewing’s sarcoma
Oncology Letters
N/A
- Yajun Deng, Qiqi Xie, Guangzhi Zhang, Shaoping Li, Zuolong Wu, Zhanjun Ma, Xuegang He, Yicheng Gao, Yonggang Wang, Xuewen Kang, Jing Wang*
- SCI, IF=2.860, JCR Q4
- Co-first_authors
2-arachidonyl glycerol modulates astrocytic glutamine synthetase via p38 and ERK1/2 pathways
Journal of Neuroinflammation
N/A
- Shenghong Wang, Hua Zhang, Bin Geng, Qiqi Xie, Wenzhou Li, Yajun Deng, Weidong Shi, Yunyan Pan, Xuewen Kang, Jing Wang*
- SCI, IF=8.324, JCR Q2
High-affinity glutamate transporters and chronic pain
Journal of Central South University (Medical Sciences)
N/A
- Zhang H, Wang S, Qiqi Xie, Li W, Shi W, Ma J, Wang J*
- CSCD
- Article in chinese
Advances in application of gemstone energy spectrum CT in skeletal system
Life science Research
N/A
- Xie Q, Li W, Shi W, Deng Y, Ren E, Ma J, Kang X, Wang J*
- CSCD, First_authors
- Article in chinese
Bioinformatics analysis of osteoarthritis expression profile microarray integration
Hua Zhong Ke Ji Da Xue Xue Bao Yi Xue Ban
N/A
- Xie Q, Li W, Shi W, Deng Y, Ren E, Ma J, Kang X, Wang J*
- CSCD, First_authors
- Article in chinese
Effects of diabetes on bone biomechanics in ovariectomized rats
Chinese Journal of Medical Physics
N/A
- Xie Q, Li W, Shi W, Deng Y, Ren E, Ma J, Pan Y, Kang X, Wang J*
- CSCD, First_authors
- Article in chinese
Selection of sites for detecting bone mineral density in diabetic osteoporosis rats by DXA
Chinese Journal of Medical Physics
N/A
- Li W, Xie Q, Ren E, Deng Y, Pan Y, Ma J, Kang X, Wang J*
- CSCD, Co-first_authors
- Article in chinese
The expression and clinical significance of formyl peptide receptor 1 in glioma were analyzed based on bioinformatics
Cancer, aberration, mutation
N/A
- Dong Q, Xie Q, Hu J, Wang M, Yuan G, Pan Y*
- CSCD, Co-first_authors
- Article in chinese
The correlation between quantitative parameters of EDCT and bone biomechanics
Chinese Journal of Medical Physics
N/A
- Dong Q, Xie Q, Zhao R, Huang X, Li W, Zhang Y, Pan Y*
- CSCD, Co-first_authors
- Article in chinese
Preliminary study on the evaluation of biomechanics by EDCT
Chinese Journal of Medical Physics
N/A
- Huang X, Xie Q, Deng Y, Zhao R, Dong Q, Zhou J*
- CSCD, Co-first_authors
- Article in chinese
Progress in the study of skeletal endocrine function
Life science Research
N/A
- Li W, Xie Q, Shi W, Deng Y, Ma Y, Xie J, Kang X, Wang J*
- CSCD, Co-first_authors
- Article in chinese
Conference proceedings
The 3th Academic Conference of Chinese Medical Association on Osteoporosis and Bone Mineral Salt
N/A
Shanxi, CN
2020 - 2018
The 9th International Symposium on Osteoporosis and Bone Mineral Salt Diseases
N/A
Suzhou, CN
The 13th Annual Congress of Chinese Orthopaedic Association
N/A
Xiamen, CN
Professional skills
Wet-lab Experimental
- I am good at Immunohistochemistry, Immunofluorescence, Western Blot, RT-PCR, RNAi, Exosome identification, Open-field Test, Water Maze Test, Forced Swimming Test, Von Frey Hair Test, Cold Hot Plate Test, and Tereotactic Injection.
Experimental instruments
- I can operate the following experimental instruments: micro-drop PCR system, automatic protein expression quantitative system, high-content live cell imaging quantitative analysis system and cell metabolic analyzers.
Software
- I have advanced experience in using Microsoft Office, Illustrator, Photoshop, GraphPad Prism, SPSS, ImageJ, Image-Pro Plus, Cytoscape, Funrich.
Statistics
- I have moderate experience in using R and Python for statistical modeling and data visualization.
Machine learning
- I know how to do machine learning (including deep learning) and have applied some technologies to my projects.
Data analysis
- I have advanced experience in using R and Shell for data preprocessing, data cleaning and data interpretation. RNA-seq, ChIP-seq, ATAC-seq, scRNA-seq, scATAC-seq Analysis. Spatial Transcriptomics.
Disclaimer
Last updated on 2024-03-16.